Resources sharing
Resources integration
ExPASy Molecular Biology Server
Internet Directory of Biotechnology Resources
Motif: Bioinformatics Web Site
Pedro's BioMolecular Research Tools
Basic Local Alignment Search Tool (BLAST)
Nucleotide or protein query sequences against the specified database using the
BLAST algorithm.
BioSCAN
The BioSCAN (Biological Sequence Comparative Analysis Node) project is an
attempt to provide a novel, powerful computational tool to molecular biologists
for rapid search and analysis of biological sequences.
Entrez Browser
WWW Entrez allows you to retrieve citations and records in the area of
molecular biology from the NCBI databases, including :
the molecular biology subset of MEDLINE,
proteins from several databases around the world;
nucleotides from GenBank and other sources.
BLOCKS
Blocks are multiply aligned ungapped segments corresponding to the most
highly conserved regions of proteins, used for detection and verification of
protein sequence homology.
CATH protein classification home page.
CATH is based on both structural and sequence relationships between proteins
at several levels of similarity.
NNPREDICT: Protein Secondary Structure Prediction
scop: Structural Classification of Proteins.
The scop database, created by manual inspection and abetted by a battery of
automated methods, aims to provide a detailed and comprehensive description
of the structural and evolutionary relationships between all proteins whose
structure is known. As such, it provides a broad survey of all known protein
folds, detailed information about the close relatives of any particular protein,
and a framework for future research and classification.
BITMed: Laboratory for Biological Informatics & Theoretical Medicine
In the BITMed Simulation Server the WWW hypertext is interleaved with true
complex systems simulations of biological, chemical and physical systems.
Molecular informatics deals with representation, encoding, storage, retrieval, processing, and exchange of information describing geometry and chemical structure of molecules, including biological macromolecules.
Hyperactive Molecules
Proposal for an Internet based standard based on primary chemical MIME
types to be used in conjunction with the the World-Wide-Web information
delivery system.
The Representation of Molecular Models Rendering Techniques
Review on molecular graphics.
Annmm
Annmm is a program- and machine-independent standard for annotating
macromolecular structures. Data encoded by this specification may be used for
communicating information about structures and for exchanging it between
different computer systems. The format consists of a set of ASN.1 objects which
are mechanically straightforward to parse, but are also easy for humans to
create and understand. It differs from all other related standards in that it
specifies how a molecule should be displayed without requiring a custom
format for the coordinate data.
DDL: A Dictionary Description Language for Macromolecular Struture
An evolving reference document which provides a detailed specification
of a Dictionary Description Language (DDL) designed to support
macromolecular structure applications.